Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  114 bits (285), Expect = 6e-30
 Identities = 81/194 (41%), Positives = 105/194 (54%), Gaps = 12/194 (6%)

Query: 154 FLNNQLNAATLEISRLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQ----VS 209
           F+    N+  +E    K Q A ++  A  DSL+GL NRR F+  +      G +    +S
Sbjct: 320 FVRQVRNSERIEADLRKAQEA-LELIATHDSLTGLANRRLFERALDVEFGRGARQRSPLS 378

Query: 210 LIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQSLC-RDGVTAYRYGGEEFALIAPHKSL 268
           LIMLDID FK  ND YGH+ GD  +  +AK L+  C R    A RYGGEEFA++ P  +L
Sbjct: 379 LIMLDIDFFKRYNDAYGHVAGDHCLAEVAKVLKDCCHRKADLAVRYGGEEFAVLLPDTNL 438

Query: 269 RIARQFAESVRRS-IEKLTVKDRRSGQSVGSITASFGVVEKIEG--DSLESLIGRADGLL 325
             A   AE +RRS I+K  +    SG   G +T S G    +    DS+E  I RAD  L
Sbjct: 439 SGAMALAEQIRRSVIDKHII---HSGSPTGYLTVSLGCYAFVPSSLDSIEVFIQRADAAL 495

Query: 326 YEAKNLGRNRVMPL 339
           Y+AK  GRNRV  L
Sbjct: 496 YQAKYNGRNRVAVL 509