Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  110 bits (276), Expect = 5e-29
 Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 112 NVIDKSFKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKE 171
           +++DK+   +  VE + ++   V   +    +D + +       +  L  +   I RL+ 
Sbjct: 236 DILDKAIATVTPVELNQIANRHVPIRVET-ATDYRLVVQMVVVFSVVLLTSLFWIGRLRR 294

Query: 172 QLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQ----VSLIMLDIDHFKALNDNYGH 227
              ++Q  +  DSL+GL NR A DG     +   ++    +S++MLDIDHFK +ND +GH
Sbjct: 295 LNEQLQIKSQTDSLTGLANRSALDGRFAVALEQARRYHRPLSIVMLDIDHFKRINDEFGH 354

Query: 228 LFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTV 287
             GD+++R IA  LQS  R      R+GGEEF ++ P  +   A  FAE   R  E++  
Sbjct: 355 QMGDRVLREIAGLLQSCLRGTDAVGRWGGEEFLVLCPETNGLQAEVFAE---RICEQVRA 411

Query: 288 KDRRSGQSVGSITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRV 336
               +GQ     + S GV E I  D+ +SL+ RAD  LY AK  GR+RV
Sbjct: 412 FPFSTGQRQ---SLSAGVAELIPADTTDSLLRRADAALYRAKRGGRDRV 457