Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., response regulator PleD from Sinorhizobium meliloti 1021

 Score =  109 bits (272), Expect = 2e-28
 Identities = 65/175 (37%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 168 RLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHA----GQQVSLIMLDIDHFKALND 223
           RL+  + +  + A+ D L+GL+NRR  +  +  LI      G+ +S+ + DID FK +ND
Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337

Query: 224 NYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIE 283
            +GH  GD ++R  A R+++  R    A R+GGEEF ++ P  +  +A   AE +R ++E
Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397

Query: 284 KLTVKDRRSGQSVGSITASFGVVE-KIEGDSLESLIGRADGLLYEAKNLGRNRVM 337
                D     +V ++TAS G+   +  GD+ E+L+ RAD  LY+AKN GRNRV+
Sbjct: 398 SRGF-DIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVV 451