Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., GGDEF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  328 bits (840), Expect = 2e-94
 Identities = 160/338 (47%), Positives = 225/338 (66%), Gaps = 1/338 (0%)

Query: 3   TTEDFKKSTANLKKVVPLMMKHHVAATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLCP 62
           T +  + +   LKK VPLM+KH +  TP+NYALWYTYV +  P+LN  +D ++  +   P
Sbjct: 8   TADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLVAQYHTLP 67

Query: 63  PASGEHLYQQYIATKAETNINQLRANVEVLLGEISSSMSDTLSDTSSFANVIDKSFKDLE 122
           P SGE LY++++A   E ++  +R N+E +  E+ + + DT  D ++F   ID +F  LE
Sbjct: 68  PVSGELLYREHLADPVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKIDANFSRLE 127

Query: 123 RVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDALF 182
           R++ ++LS+E+V+ ++R LV +S  IR ST++   QL  A  EI  LK +LA+ +KD  F
Sbjct: 128 RIDNESLSLEQVLNLVRTLVKESDAIRESTSYFTGQLAKAQQEIDTLKRRLAESEKDVFF 187

Query: 183 DSLSGLYNRRAFDGDMFTLIH-AGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRL 241
           D+L+G  NRRAFD D+  L+  A +   LI+ DIDHFK  NDNYGH  GDQ+++ + KRL
Sbjct: 188 DALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVLKLVGKRL 247

Query: 242 QSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITA 301
              CRDGV  YRYGGEEFAL+ P  +LRIARQ AE +RR +EKLT+KDRR    + +I+A
Sbjct: 248 TEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISA 307

Query: 302 SFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVMPL 339
           SFGV +     +  +LI  +D  LYEAK LGRNRVMP+
Sbjct: 308 SFGVAQWQPKMTARNLIEHSDKQLYEAKRLGRNRVMPI 345