Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  104 bits (260), Expect = 5e-27
 Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 20/231 (8%)

Query: 119 KDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNF-LNNQLNAATLEIS----RLKEQL 173
           K  +R++Q+ L   +    IR    ++  +   TN  L  ++   TLE+      L E  
Sbjct: 391 KAKQRIQQEALKQAQK---IRSAREEALKVEAETNERLEQKVQERTLELEITLRELHEVN 447

Query: 174 AKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQ----VSLIMLDIDHFKALNDNYGHLF 229
            K+ + +  DSL+G+ NR AFD  +       ++    ++L+MLDID FK++ND +GHL 
Sbjct: 448 QKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSINDQFGHLA 507

Query: 230 GDQIIRAIAKRLQS-LCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVK 288
           GDQ ++ IA+ LQ  L R      R+GGEEFA+I P+ +   A Q AES+R ++  + + 
Sbjct: 508 GDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRDTVSCIGL- 566

Query: 289 DRRSGQSVGSITASFGVVEKI---EGDSLESLIGRADGLLYEAKNLGRNRV 336
               G+ +  +T S GV   +   E  S E L+ +AD  LY+AKN GRN+V
Sbjct: 567 -TWEGKPI-PLTVSIGVSADVIMNEQHSTE-LLEQADKALYQAKNSGRNQV 614