Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  354 bits (908), Expect = e-102
 Identities = 174/339 (51%), Positives = 234/339 (69%), Gaps = 1/339 (0%)

Query: 2   MTTEDFKKSTANLKKVVPLMMKHHVAATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLC 61
           M+ +  + +  NLKK VPLM+KH +  TP+NYALWYTYV +    LNA++D+V+ ++  C
Sbjct: 1   MSRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNLALNAQLDTVIAHYNTC 60

Query: 62  PPASGEHLYQQYIATKAETNINQLRANVEVLLGEISSSMSDTLSDTSSFANVIDKSFKDL 121
           PP S E LY+QY+A   E N+  +R N+E +  E+S S+ DT  DT+ F   I+ +F  L
Sbjct: 61  PPVSSELLYRQYVADPVELNVRDMRLNLEAMATELSQSIKDTSLDTTEFQTCINSNFSKL 120

Query: 122 ERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDAL 181
             +E+  LS+E+V+ ++R LV +S +IR ST FL  QL  A  EI  LK++L K +KD L
Sbjct: 121 NGIEEGALSVEQVLDLVRNLVKESDNIRSSTEFLTTQLQKAQTEIDALKQKLEKTEKDVL 180

Query: 182 FDSLSGLYNRRAFDGDMFTLI-HAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKR 240
           +D+L+G  NRRAFD D+  +I  A +   LI++DIDHFKA NDNYGH  GDQ+++A+AKR
Sbjct: 181 YDALTGCLNRRAFDADIAGMIAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKR 240

Query: 241 LQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSIT 300
           LQ  CRDG   YR+GGEEFA+I P   LRI RQ AE++RR +EKL +KDRR  Q V +IT
Sbjct: 241 LQEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRRGLEKLCLKDRRKDQLVDNIT 300

Query: 301 ASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVMPL 339
           ASFGV +  E  S+  LI + D LLYEAK LGRNRVMP+
Sbjct: 301 ASFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRVMPI 339