Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (402), Expect = 9e-44
 Identities = 96/318 (30%), Positives = 163/318 (51%), Gaps = 13/318 (4%)

Query: 26  VAATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLCPPASGEHLYQQYIATKAETNINQL 85
           +  TP NY +WY Y  Q+   LN  +D  L N  +        LY+ +I  K+   I  +
Sbjct: 6   IPVTPENYTVWYEYFAQSNLDLNRAIDGFLANNVVFTKEVNTSLYKNFIQEKSPEVIENV 65

Query: 86  RANVEVLLGEISSSMSDTLSDTSSFANVIDKSFKDLERVEQDNLSIEEVMTVIRRLVSDS 145
           +   ++L+  + S ++     T +F+N +     D     Q +  +  +  ++  ++ + 
Sbjct: 66  QIETQILINSLISKITQLNQGTEAFSNTL----ADFGLQLQSSPDVNTLNQLVDGVIDEM 121

Query: 146 KDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAG 205
           +++  +   +   LNA   E+  LK ++  +   A+ D L+ L+NRRA++  +   IH  
Sbjct: 122 QNLLVNNQTMEQSLNAMGQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRA 181

Query: 206 QQ----VSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFAL 261
           ++     SL+++DID FK  ND YGH  GD+++  +A  L+   R      RYGGEEF +
Sbjct: 182 EEQHTRCSLLLIDIDRFKVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVV 241

Query: 262 IAPHKSLRIARQFAESVRRSIEKLTV---KDRRSGQSVGSITASFGVVEKIEGDSLESLI 318
           + P+     A Q AE++R  I +  +   KD++   S+G+IT S G+    +GD  E+L 
Sbjct: 242 LLPNTHFHDALQVAETLRGRISERRLAIGKDKK--LSLGAITVSIGLASLQKGDDAETLF 299

Query: 319 GRADGLLYEAKNLGRNRV 336
            RAD  LYEAK+ GRN V
Sbjct: 300 SRADKALYEAKSDGRNCV 317