Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (276), Expect = 6e-29
 Identities = 68/168 (40%), Positives = 99/168 (58%), Gaps = 11/168 (6%)

Query: 175 KVQKDALFDSLSGLYNRRAFDGDMFTLIHA----GQQVSLIMLDIDHFKALNDNYGHLFG 230
           K+Q D   D+L+ L+NRR+FD  +   +      G  ++L+MLDIDHFKA+ND YGH  G
Sbjct: 310 KLQAD--HDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLMLDIDHFKAVNDTYGHPAG 367

Query: 231 DQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDR 290
           D ++R +A+ +++ CR    A RYGGEEF +I PH   +  R FAE +R+ +    V+  
Sbjct: 368 DAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRIFAERLRKRLASSRVE-- 425

Query: 291 RSGQSVGSITASFGVVEKIEGDSL--ESLIGRADGLLYEAKNLGRNRV 336
             G+++ ++T S G+        L  E L+  ADG LY AK  GRN V
Sbjct: 426 VDGKTI-AVTVSIGLATLSAAAPLSPERLVCEADGALYAAKAAGRNIV 472