Pairwise Alignments

Query, 306 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., response regulator receiver modulated CheW protein (RefSeq) from Shewanella sp. ANA-3

 Score =  373 bits (958), Expect = e-108
 Identities = 184/296 (62%), Positives = 233/296 (78%), Gaps = 1/296 (0%)

Query: 6   SKANQSQGMLMFTLSAQQQLFAIGTLKVREIVTYQPMTQIPYSHHHVIGTVTIRNLTVPV 65
           SKA+QSQG+L+F LS Q Q+FA+GTLK+RE+V Y P+++IP SH  ++G  TIR  T+PV
Sbjct: 3   SKASQSQGLLLFRLS-QTQVFALGTLKIRELVPYTPLSKIPQSHPTIMGAATIRGHTIPV 61

Query: 66  IDMAAAIGFRPIQPSEYQKCYLIVTDCLRTVVAFMVRTIEKIIECDWRQIESSPETAGHD 125
           +DMAAAIG+RPI   E Q CY+I+TDC R ++ F+VR I+KIIEC+WR IE+     G +
Sbjct: 62  VDMAAAIGYRPISDEERQHCYIIITDCQRMIIGFLVRAIDKIIECNWRDIEAPSANLGRN 121

Query: 126 VFVTGITRFQNKIVQLLDVELLLSKIYPQYESTKVPMLTDIERERLKPLNILLVDDSSIA 185
            F+TG+TR+ N++VQLLDVELLLSK++P        +LTD++RE+LKP+ ILLVDDS +A
Sbjct: 122 AFLTGVTRYDNQLVQLLDVELLLSKVFPDAPEANRAILTDVQREKLKPMRILLVDDSKVA 181

Query: 186 RKQLSDALDSINIPYHICKNGSEALDLMRDMARDHRAIDILVSDIEMPGLDGYELAFEMQ 245
           RKQLSDALDSINIPY +  +G EAL +M   A +H  IDILVSDIEMPGLDGYELAFE++
Sbjct: 182 RKQLSDALDSINIPYFVTPDGKEALSIMEQAAAEHHPIDILVSDIEMPGLDGYELAFEVR 241

Query: 246 NDPQLNHAYCILHTSLSSEICVDRAHQVGAHEALEKFNATELVEAMLRGAKKLQTQ 301
           ++P L  AY ILHTSLSSEI V +AHQVGA+EAL KF+A ELVEAMLRGA    T+
Sbjct: 242 DNPLLAKAYIILHTSLSSEISVSQAHQVGANEALTKFDAHELVEAMLRGADLAATR 297