Pairwise Alignments

Query, 224 a.a., helix-turn-helix transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.3 bits (142), Expect = 6e-14
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 26/222 (11%)

Query: 1   MKDENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVID 60
           MK EN LN+ +  D  +    L++AL S    A E T     W E    +S      V+D
Sbjct: 1   MKLEN-LNIIIADDHPLFRNALRQALSS----AFEHTQ----WFEA---DSADALQSVLD 48

Query: 61  YSRISDD-VLTD--------YSSFKHISC--PDAKEVIINCPQDIEHKLLFKWNNLAGVF 109
              +S D VL D        YS+  H+    PD   ++I+  +DI           +G  
Sbjct: 49  SPTVSYDLVLLDLQMPGSHGYSTLIHLRSHYPDLPVIVISAHEDINTISRAIHYGGSGFI 108

Query: 110 YIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKL 169
                M+TL + ++ +L  ++WL +      I+     ++   +   + LT ++ +++++
Sbjct: 109 PKSASMETLKEALTAVLYGDIWLPKGAD---IIPIEDDSTDKMASKLSDLTPQQYKVLQM 165

Query: 170 LGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALI 211
              G  N +IA  L VSE T+K H   +F+K+  +NR QA+I
Sbjct: 166 FAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207