Pairwise Alignments

Query, 321 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Shewanella loihica PV-4

 Score =  116 bits (290), Expect = 1e-30
 Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 6/176 (3%)

Query: 137 IGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDI 196
           I V  D++D ++ + Q    ANTD LT++ NRR +     AA +R+ R + PL+    DI
Sbjct: 321 IVVIKDLSDEMQYKSQ----ANTDPLTKVANRRAINRQLAAAISRSNRQQTPLAVCIFDI 376

Query: 197 DNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLA 256
           D+FK +ND+ GH  GD+VL  +AK+F   I    F GR GGEEF+I+LE+T  E A H A
Sbjct: 377 DHFKAVNDKHGHLVGDDVLQRVAKIFSDAIRKTDFVGRWGGEEFVIILEDTDKEGAKHFA 436

Query: 257 EQIRQRFAEH-PFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRN 311
           +++RQ         +    I L AGVS     D     ++  +DQALY+AK +GR+
Sbjct: 437 DKLRQEVKRRSQGIDFPVAITLSAGVSVYCQDDKQDC-LFNHADQALYRAKESGRD 491