Pairwise Alignments

Query, 321 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  100 bits (249), Expect = 1e-25
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 30/288 (10%)

Query: 43  VFVKNRRGEYLYANPLTLKLFEADAQSLFGKTDHDFFHDDQLSDILA-----ADQQVFET 97
           +F+ +  G  +  NP   ++   DAQS+ G+          LS  L        + V++ 
Sbjct: 392 IFITDSAGTVVAVNPAFERITGVDAQSMVGR----------LSPALGMVPVNGTRSVWDE 441

Query: 98  RL---SVIHEERAIAKSNGLVRIYRAVKHPILHRVTGEVIGLIGVSTDITDIVELREQLY 154
            L   S I E R   +    +  + ++    +   TG ++  +GV +DITDI +   Q+ 
Sbjct: 442 MLEHGSWIGETRGPHRDGWQIPQWLSLVS--IRDETGVILNCVGVFSDITDIKQKEAQIT 499

Query: 155 QLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKGDEV 214
             AN D LT L NR+ ++     A ARA    Q L+ + ID+D FK IND + H  GD++
Sbjct: 500 HQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAVVFIDMDGFKFINDSYDHATGDQL 559

Query: 215 LCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQRFAEHPFFEQNEH 274
           LC +A+  ++ +      GR+GG+EF+  +    +    HL   +R+ F    F E  E+
Sbjct: 560 LCDVARRLRAALRPGDMLGRLGGDEFVAAVGG--ISDKGHLDGIMRRLF--ETFAEPFEY 615

Query: 275 IYLCAGVS-----SLHHGDHDIAD-IYRRSDQALYKAKRNGRNRCCIY 316
             +   V+     S++  D D A+ +  R+D A+Y+AK  G+N   ++
Sbjct: 616 GGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKNAIAVF 663