Pairwise Alignments

Query, 321 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 1e-28
 Identities = 70/192 (36%), Positives = 99/192 (51%), Gaps = 3/192 (1%)

Query: 131 GEVIGLIGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLS 190
           GE+   + V  DI+   +   QL  LA  D LT L NR KL    +     AKRL   L+
Sbjct: 426 GEIRYFVAVFADISAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLA 485

Query: 191 CISIDIDNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLEN-THV 249
            + ID+D FK IND FGH  GDE+L  LAK  +S + +     R+G +EF+ ++    + 
Sbjct: 486 TVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYH 545

Query: 250 ETAFHLAEQIRQRFAEHPFFEQNEHIYLCAGVS-SLHHGDHDIAD-IYRRSDQALYKAKR 307
           E A     Q+RQ F +       +H+ L A +  SL+  D   AD + R +D A+Y+AK 
Sbjct: 546 EDATAAINQLRQVFEQPFVVSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKS 605

Query: 308 NGRNRCCIYRQS 319
            GRN    Y +S
Sbjct: 606 EGRNNYAFYTES 617



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 42  YVFVKNRRGEYLYANPLTLKLFEADAQSLFGKTDHDFFHDDQLSDILAADQQVFETRLSV 101
           +++VKN  G Y   N    K ++     + GKTD D F        L  D+   E    +
Sbjct: 216 HIWVKNTEGVYTICNQSVEKAWDLPRSDIVGKTDEDLFGKAIADIFLNGDRLAIEAGAPI 275

Query: 102 IHEERAIAKSNGLVRIYRAVKHPILHRVTGEVIGLIGVSTDITDIVELREQLYQLAN 158
           I  E    ++         +K P L    GE+ G+IG++ +I+   E+ EQL    N
Sbjct: 276 IVAECLDGENKNNHLWLETLKLPAL-TPDGELAGVIGMTRNISKHKEVEEQLTLATN 331