Pairwise Alignments

Query, 321 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (267), Expect = 4e-28
 Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 7/182 (3%)

Query: 136 LIGVSTDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISID 195
           L  +  ++ ++    E L   A TD LT L NRR      +    RA+      S + ID
Sbjct: 135 LNAMGQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLID 194

Query: 196 IDNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHL 255
           ID FK+ ND +GH  GD+VL ++A   +  +    F  R GGEEF+++L NTH   A  +
Sbjct: 195 IDRFKVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQV 254

Query: 256 AEQIRQRFAEHPFFEQNEH------IYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNG 309
           AE +R R +E       +       I +  G++SL  GD D   ++ R+D+ALY+AK +G
Sbjct: 255 AETLRGRISERRLAIGKDKKLSLGAITVSIGLASLQKGD-DAETLFSRADKALYEAKSDG 313

Query: 310 RN 311
           RN
Sbjct: 314 RN 315