Pairwise Alignments

Query, 263 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 9e-28
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 1/238 (0%)

Query: 20  DVFMNFEAFLSNTETREHSHPWGQVQLISGGILEMEAEDTRFLAPPHLAIWVPAGIRHRS 79
           ++ +   A +   ++  H H   Q+   S G +     DT+ + PP  A W+PAG+ H  
Sbjct: 17  NLVIGIAADMGKHDSGMHHHHKAQLLYASAGCMRFSLADTQVVLPPTRAAWLPAGVEHHV 76

Query: 80  YNRKPIEYCSLNIASQLTTAFPAKTSLIKVTSIVSAIIDDFRERNINVAQSCEDKRLVQV 139
             R  + Y SL    +   + P++ ++  V  ++ A+ID       N  +  +      +
Sbjct: 77  TMRNVVAYRSLYFEPEAVASLPSEVTIFHVNPLLKALIDTMSYWPWNKPRYSQHNAFA-L 135

Query: 140 LLDQLATRETQHHFLPSTNHKYLAPILAFVEENPTDNTTLQQWAEKVHTTERTLARHCQA 199
             ++L   + ++  LP    K L   L  V +       L++ A ++  +ERT++R   +
Sbjct: 136 FCEELENAKAENLALPLPQDKRLQTWLKQVLQQEMQPANLKEMAIEIGASERTISRIFSS 195

Query: 200 ELGMSFTEWRLRVRYLYSMELLRQGHAVKEVALTLGYNQASPFITMFKKYSGLTPEQY 257
           + GM++  WR + R L ++E L  G +V +    L ++  S FI+ FK+Y+G TP QY
Sbjct: 196 QTGMAYQAWRQQWRLLSAIEQLAAGTSVAQAGFNLQFSSDSAFISFFKQYTGTTPAQY 253