Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (277), Expect = 5e-29
 Identities = 107/382 (28%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

Query: 10  RCTSCHLCAQPYSEQVTNKDQQLRELIAPATDV---QWLPPVTSADTAFRNKAKMVVLGA 66
           RC  C +   P+ EQ+  K + L E ++    V   +W  P++  +  +R +A++ V   
Sbjct: 96  RCGGCSVQHLPHDEQLALKQRMLAEQLSRVAGVVPEEWAAPLSGPEFGYRRRARVAVRWD 155

Query: 67  AHAPIL--GIEDAQGQPLSLV-TCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELK 123
             A  L  G      Q +  +  CP+  QP+Q +++ L   +R        +L K   L 
Sbjct: 156 QKAKKLEVGFRAVGSQDIVAIGDCPVLVQPLQPIMSRLPEMLR--------RLSKPQALG 207

Query: 124 FILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL--- 180
            + L            F   S AVL R     P   A   +++    +    H A+L   
Sbjct: 208 HVEL------------FAGSSRAVLLR--HMAPLSEADLTILK----DFCAFHEAQLWLH 249

Query: 181 -EGEEEIFLTETQSLLEHFN--DVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQM 237
            EGE +  +   Q+L    +  D+ +  RP  F Q N  V E + A A  W+   A  ++
Sbjct: 250 GEGEPQP-VEPGQALGFRLDAWDLELAYRPGDFIQVNAGVNEAMIAQALQWLAPRAEERV 308

Query: 238 WDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD------SA 291
            DLFCG+G FAL  A     V  +E     +  A  +A    ++N +F   D       A
Sbjct: 309 LDLFCGLGNFALPLAQSVRQVVAVEGVQTMVDRAAANAVSNNLNNTAFFQADLSQPLADA 368

Query: 292 KFSQSQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSY 349
           ++     SA   VL++PPR G   E+  +L +L  K ++Y SCNP T+ +D  EL    Y
Sbjct: 369 EWIGEGFSA---VLLDPPRDG-AFEVVRKLSSLGAKRLVYVSCNPATLARDTVELIKQGY 424

Query: 350 QMIRVQWFDMFPHTDHAEVLTL 371
           ++ R    DMFP T H E + L
Sbjct: 425 RLKRAGILDMFPQTAHVEAMAL 446