Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

 Score = 87.8 bits (216), Expect = 5e-22
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 200 DVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVT 259
           DV +  RP  F Q N  + +++ A A   +      ++ DLFCG+G F L  A     V 
Sbjct: 264 DVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVV 323

Query: 260 GIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS---QMSAPELVLVNPPRRGLGSE 316
           G+E +   +A A+ +AQ  G+DN  F A D  +  +         + +L++PPR G   +
Sbjct: 324 GVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPPRSG-AID 382

Query: 317 LTAQLEALAPKYILYSSCNPQTMVKDIAEL---SSYQMIRVQWFDMFPHTDHAEVLTLLV 373
           +  QL     K I+Y SC+P ++ +D   L     + ++     DMFPHT H E + +  
Sbjct: 383 VLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHVESIAVFE 442

Query: 374 RK 375
           ++
Sbjct: 443 KR 444