Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., 23S rRNA m(5)U-1939 methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score =  108 bits (270), Expect = 3e-28
 Identities = 108/387 (27%), Positives = 171/387 (44%), Gaps = 49/387 (12%)

Query: 3   CEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDV---QWLPPVTSADTAFRNKA 59
           CE+F   RC  C +   P+ EQ+  K + L E +    +V   +W  P++ A+ A+R +A
Sbjct: 91  CEYF--GRCGGCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRA 148

Query: 60  KMVVLGAAHAPIL--GIEDAQGQPL-SLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKL 116
           ++ V   A A  L  G   A  Q + S+  CP+  Q +Q ++  L   ++      ++K 
Sbjct: 149 RVAVRWDAKAKRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLK-----SFSKP 203

Query: 117 KKKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVH 176
           +  G ++      S  +   +LR  A        +E +L  L A               H
Sbjct: 204 QVLGHVELF----SGVATAVLLRHTA------SLVEADLALLQAFCSR-----------H 242

Query: 177 MARL----EGEEEIFLTETQSL---LEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWV 229
            A+L    EGE +   +   +L   LE +N + +  RP  F Q N  V   +   A  W+
Sbjct: 243 GAQLWLHGEGEPQP-ASPGDTLGYRLEPWN-LQLAWRPGDFIQVNASVNTAMIEQALQWL 300

Query: 230 REIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD 289
                 ++ DLFCG+G FAL  A     V  +E     +  A  +A    + N+ F   D
Sbjct: 301 APAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATMVERAAVNAMSNDLHNVRFFQAD 360

Query: 290 -SAKFSQSQMSAP--ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL 346
            S   +Q+  +A     VL++PPR G   E+  Q+     + +LY SCNP T+ +D  EL
Sbjct: 361 LSQPLTQADWAAEGFSAVLLDPPRDG-AFEVVRQIRKTGARRLLYVSCNPATLARDAVEL 419

Query: 347 --SSYQMIRVQWFDMFPHTDHAEVLTL 371
               Y++ R    DMFP T H E + L
Sbjct: 420 IRQGYRLKRAGILDMFPQTAHVEAMAL 446