Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score =  142 bits (359), Expect = 1e-38
 Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 17/377 (4%)

Query: 7   IQKRCTSCHLCAQPYSEQVTNK----DQQLRELIAPATDVQWLPPVTSAD--TAFRNKAK 60
           +  +C  C      Y  QV  K       ++ L    T+VQ   P  +A     +RNK  
Sbjct: 81  VADKCGGCQWQTVDYPAQVEAKTVIVQDAMQRLGQLETEVQ---PTIAAPYPLGYRNKVS 137

Query: 61  MVVLGAAHAPILGIEDAQGQP--LSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKK 118
             +  +    +      +G    ++L  CP+    +  LLA ++  I     P Y++  +
Sbjct: 138 YPLRRSDRGEVQAGYFRKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTR 197

Query: 119 KGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMA 178
              L+ + L   + +G+ ++  +A    + E +E      +  +P +  + +N+ P H  
Sbjct: 198 SRGLRHLGLRIGQRTGEILITLIATDDQLPE-VEAQAEQWLTDYPNVVGVCLNLNPSHGN 256

Query: 179 RLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMW 238
           R+ G+E   L     L+E  +D+   I P++FFQ N + AE+L    + ++R     +++
Sbjct: 257 RILGDETHCLAGRPYLIECLDDLEFAIGPETFFQVNTEQAERLLPILKDFLR--GSDRLF 314

Query: 239 DLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQM 298
           DL+CGVG   L  A+   +V G+EI PE++  AQ++A   GI N+ F A           
Sbjct: 315 DLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQIP 374

Query: 299 SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS---YQMIRVQ 355
            +P+ VL++PPR+G    +   L    P+ I Y SCNP T+ +D+  L +   Y+++ VQ
Sbjct: 375 ESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLVQ 434

Query: 356 WFDMFPHTDHAEVLTLL 372
             D FP T H E + LL
Sbjct: 435 PLDFFPQTAHVETVALL 451