Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  120 bits (300), Expect = 9e-32
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 31/372 (8%)

Query: 10  RCTSCHLCAQPYSEQVTNKDQQLRELI---APATDVQWLPPVTSADTAFRNKAKMVVLGA 66
           +C  C L       Q+  K Q L +++   A  T       V+     +R +A++  L  
Sbjct: 88  KCGGCDLQHLSLPRQLEYKRQALGDIVSRSAAQTVTVNTDEVSGDSWHYRRRARLATLLD 147

Query: 67  AHAPILGI---EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELK 123
                L +   E+     + + +C +  +P+ EL++     +        N+LK K  L 
Sbjct: 148 KETNQLALGFREEGSKSVVGIDSCAVLARPLSELISPFATLL--------NRLKGKQRLG 199

Query: 124 FILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGE 183
            + LT++ N     L  V R  A L + ++ L   ++AF     I++ +Q       EGE
Sbjct: 200 HLELTQAANG----LFAVLRVTAPLAQSDKKL---LSAFADERQIALLLQGN-----EGE 247

Query: 184 EEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCG 243
            E   +  +      + + +   P +F Q N +V + + A A  W+   A  ++ DLFCG
Sbjct: 248 LEFLSSGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCG 307

Query: 244 VGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAK--FSQSQMSAP 301
           VG F+L  A     V G+E  PE +A A+++A + G+DNLSF   D ++   ++  +   
Sbjct: 308 VGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSEDLAAEPWLGKI 367

Query: 302 ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQWFDM 359
           + +L++P R G   E    L+ + P  +LY SCNP ++ +D   L  + YQ+ R+   DM
Sbjct: 368 DKLLLDPARAG-AYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVDM 426

Query: 360 FPHTDHAEVLTL 371
           FP T H+E + L
Sbjct: 427 FPQTHHSEGMAL 438