Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 19/183 (10%)

Query: 209 SFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAI 268
           SF Q N  VA ++   A    ++ +   + +L+CG G F++  A     V   E+   ++
Sbjct: 186 SFTQPNAGVAVKMLEWALDATKQ-SSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSV 244

Query: 269 ASAQRSAQMMGIDNLSFAALDSAKFSQS---------------QMSAPELVLVNPPRRGL 313
            +AQ + Q+  + NL    + + +F+++               Q      + V+PPR GL
Sbjct: 245 EAAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGL 304

Query: 314 GSELTAQLEALAPKYILYSSCNPQTMVKDIAELS-SYQMIRVQWFDMFPHTDHAEVLTLL 372
             E    ++    + ILY SCNP T+  ++  LS +++++R   FD FP+T H E   +L
Sbjct: 305 DDETVKLVQGY--ENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVML 362

Query: 373 VRK 375
            R+
Sbjct: 363 KRR 365