Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 92/375 (24%), Positives = 155/375 (41%), Gaps = 36/375 (9%)

Query: 10  RCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQ---WLPPVTSADTAFRNKAKMVVLGA 66
           RC  C L     S Q   K   L  LI      Q      P++     +R +A++     
Sbjct: 88  RCGGCDLQHLELSAQRDAKQTALENLINKMGRTQPQTMSEPLSGEGWHYRRRARLATQYL 147

Query: 67  AHAPILGIED---AQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELK 123
                L +     A  + +++  CP+  + + EL+A L   +        N+L  K  L 
Sbjct: 148 RDTKQLNLGFRALASSEVVNIDACPVLAKSLSELIAPLNQCL--------NRLSAKRSLG 199

Query: 124 FILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGE 183
            + L   ++    +LR       +   +      L+A F            V +  L+ +
Sbjct: 200 HVELLSVDSGPCVVLR-------ITSPLNDKDKALLATFG-------EQHKVRLVLLDDD 245

Query: 184 EEIFLTETQSLLEHF---NDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
            ++        L ++   +   +   P +F Q N ++ +Q+   A  W++     ++ DL
Sbjct: 246 SKLETLWGDEGLPYYTLEDGSSLGFSPGNFIQVNGEINQQMVTQAIDWLQIQPGERVLDL 305

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD-SAKFSQSQ-M 298
           FCGVG F L  A     V G+E     +A A+ +A M G++   F   D SA  S +  +
Sbjct: 306 FCGVGNFTLPLAKAGAQVVGVEGVDAMVAQARVNATMSGVEGAEFYHGDLSADLSAAPWL 365

Query: 299 SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQW 356
              + +L++P R G   E    L+ + PK I+Y SCNP ++ +D   L    YQ+ R+  
Sbjct: 366 GRIDKLLLDPARAG-AYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLSRLGL 424

Query: 357 FDMFPHTDHAEVLTL 371
            DMFP T H E + L
Sbjct: 425 IDMFPQTHHIEAMAL 439