Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  437 bits (1125), Expect = e-127
 Identities = 219/376 (58%), Positives = 268/376 (71%), Gaps = 2/376 (0%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           M+C +F   +C SC     P S+QV  K   L  L+   +  QWLPPV   ++ FRNKAK
Sbjct: 1   MKCAYFDANQCLSCRHLKTPLSDQVAAKTATLAALLKDLSVEQWLPPVVGPESGFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVVLGAAH PILG+    G+ +SL  C LYPQ MQ+LL  LE ++R AGIPPY   K KG
Sbjct: 61  MVVLGAAHQPILGLVSPSGEAVSLCDCSLYPQDMQQLLHRLEAFVRQAGIPPYRVDKAKG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELKFILLTRS+  G++MLRFV RS   + RIER LP L+A  P I+V+SVN+QPVHMA L
Sbjct: 121 ELKFILLTRSQVRGEYMLRFVMRSEQAIPRIERELPRLLAEHPEIKVVSVNLQPVHMAIL 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGEEEIFLTE   L E FN VP+ IRPKSFFQT+P+VA +LY +AR W RE+APT +WDL
Sbjct: 181 EGEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAKLYLSARKWTRELAPTSIWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQM-- 298
           FCGVGGF LHCA+ + A+TGIEIE EAIA A+ SA+ +G+D + F ALDS  F+      
Sbjct: 241 FCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASDSRGE 300

Query: 299 SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFD 358
             PEL++VNPPRRG+G  L   L   APK ILYSSCNP+T+ KD+  +S Y++ +VQ FD
Sbjct: 301 EKPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCISGYRVTKVQLFD 360

Query: 359 MFPHTDHAEVLTLLVR 374
           MFPHTDH EVL +L R
Sbjct: 361 MFPHTDHFEVLVMLQR 376