Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 209 SFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAI 268
           SF Q N +VA ++   A    R+ +   + +L+CG G F++  A     V   E+   ++
Sbjct: 186 SFTQPNGEVAIKMLEWAIDITRD-SSGDLLELYCGNGNFSIALAQNFNRVLATELAKPSV 244

Query: 269 ASAQRSAQMMGIDNLSFAALDSAKFSQS--------QMSAPEL-------VLVNPPRRGL 313
            SAQ + +   IDNL    + +  F+ +        ++   +L       + V+PPR GL
Sbjct: 245 DSAQYNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAGL 304

Query: 314 GSELTAQLEALAPKYILYSSCNPQTMVKDIAEL-SSYQMIRVQWFDMFPHTDHAEVLTLL 372
                + ++    + ILY SCNP T++ ++  L  ++++ R   FD FP+TDH E   LL
Sbjct: 305 DDNTLSMVQGY--ERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLL 362

Query: 373 VRK 375
            R+
Sbjct: 363 ERR 365