Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 29/373 (7%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELI---APATDVQWLPPVTSADTAFRNKAKMVV-LGA 66
           C  C +     + QV  K + L   +   A     Q   P+      +R++A++ V +  
Sbjct: 72  CGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARLTVRMVE 131

Query: 67  AHAPILGIEDAQGQPLS-LVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFI 125
           +   ++G  + +   ++ L TCP+ P  + +LL  L           + +L  +  L  +
Sbjct: 132 SKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQL--------FVRLSIRDRLPQV 183

Query: 126 LLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEE 185
            +   E     +LR       +LE +      L+ AF     I   +QP   A       
Sbjct: 184 EIAVGEKCTVMVLR-------ILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHP 236

Query: 186 IFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVG 245
           +   +   LL  F  + M   P  F Q NP + + L   A   +      ++ DLFCG+G
Sbjct: 237 VDGPDLSYLLPEFG-LEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGLG 295

Query: 246 GFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGI-DNLSFAALDSAKFSQSQMSAP--- 301
            F L  A     V G+E   E    A+ +A   G+  N+SF   +  + +   + A    
Sbjct: 296 NFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHF 355

Query: 302 ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL---SSYQMIRVQWFD 358
           + +L++PPR G   E+   L   +P  I+Y SCNP T+ +D A L     Y+       +
Sbjct: 356 DKMLIDPPREG-AVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVN 414

Query: 359 MFPHTDHAEVLTL 371
           MFPHT H E + L
Sbjct: 415 MFPHTSHVESIAL 427