Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Pantoea sp. MT58

 Score =  422 bits (1084), Expect = e-122
 Identities = 211/375 (56%), Positives = 260/375 (69%), Gaps = 1/375 (0%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           M C  +   RC SC    +PY  Q+++K   L +L+A      WLPPVTS   AFRNKAK
Sbjct: 1   MHCALYDANRCRSCQWLEKPYPIQLSDKQSMLEQLLAEQPVTAWLPPVTSPQQAFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G+   P+LG+    G+ + L  CPLYP   Q +   L+ +I  AG+ PYN  +K+G
Sbjct: 61  MVVSGSVERPVLGLIHRDGEAVDLCDCPLYPASFQPVFTALKPFIARAGLTPYNVARKRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELKF+L+T S+  G  MLRFV RS A LE++   LP L    P + VIS NIQPVHMA L
Sbjct: 121 ELKFLLITESQQGG-IMLRFVLRSTAKLEQLRAALPWLQQQLPQLAVISANIQPVHMAIL 179

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGEEEI LT  QSL E+FN VP+ IRP+SFFQTNP+VA  LYATAR WVR +    MWDL
Sbjct: 180 EGEEEIALTPAQSLAENFNGVPLWIRPQSFFQTNPQVASALYATARDWVRALPVNSMWDL 239

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA P+  +TGIEI  EAI  AQRSA+M+G++ + FAALDS  F+  + + 
Sbjct: 240 FCGVGGFGLHCATPEMELTGIEISAEAIKCAQRSAEMLGLEKVQFAALDSTSFATGRDAV 299

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           P+LVLVNPPRRG+G  L   L  +AP Y+LYSSCNPQTMV+DIA LS+Y++ +VQ FDMF
Sbjct: 300 PQLVLVNPPRRGIGEALCDYLSQMAPDYLLYSSCNPQTMVQDIARLSAYEVTKVQLFDMF 359

Query: 361 PHTDHAEVLTLLVRK 375
           PHT H EVLTLL R+
Sbjct: 360 PHTAHFEVLTLLTRR 374