Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pantoea sp. MT58

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 6/195 (3%)

Query: 182 GEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLF 241
           G+E +          H + + +   P+ F Q N  V +Q+ A A  W+      ++ DLF
Sbjct: 241 GDENLTALSESMPFYHSHQLKLTFNPQDFIQVNDGVNQQMVAKAIAWLDLQPEDRVLDLF 300

Query: 242 CGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAP 301
           CG+G F L        V G+E     +  A  +A +  + N+SF   +  +    Q  A 
Sbjct: 301 CGMGNFTLPVGIFVQNVVGVEGIAALVRQAAYNADLNNLKNVSFFQHNLEEEVSRQPWAT 360

Query: 302 E---LVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS--YQMIRVQW 356
           +    VL++P R G  + + A +  LAP+ ++Y SCNP T+ +D   L S  YQ+ RV  
Sbjct: 361 QGFNKVLLDPARAG-AAGVMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAM 419

Query: 357 FDMFPHTDHAEVLTL 371
            DMFPHT H E + L
Sbjct: 420 LDMFPHTRHLESMVL 434