Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (257), Expect = 9e-27
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 37/377 (9%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQW--LPPVTSADTAFRNKAKMVVLGAAH 68
           C  C L     + Q  +K   L +++A     +    P ++     +R +A++  L   +
Sbjct: 89  CGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSLAPALSGEGWHYRRRARLATLFDKN 148

Query: 69  APILGI---EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFI 125
              L +     +    +S+  C +  +P+ +L+A     +        N+L  K  L  +
Sbjct: 149 TKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLL--------NQLAAKSSLGHL 200

Query: 126 LLTRSENSGQFMLRFVARSHAVLERIERNLP----TLIAAFPMIEVISVNIQPVHMARLE 181
            L  ++N            H  + RI ++L       +A F     I + +Q  +     
Sbjct: 201 ELIAADNG-----------HFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQD-NEGEFH 248

Query: 182 GEEEIFLTETQSLLEHFNDVPMV---IRPKSFFQTNPKVAEQLYATARTWVREIAPTQMW 238
           G     L     LL+   DV  V     P +F Q N ++ + + A A  W+      ++ 
Sbjct: 249 GVNGTLLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERIL 308

Query: 239 DLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSF--AALDSAKFSQS 296
           DLFCG+G F+L  A     V G+E  PE ++ A+ +A   G+ NL+F    L +   S+ 
Sbjct: 309 DLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEP 368

Query: 297 QMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRV 354
            M   + +L++P R G   E    L+ + P+ ++Y SCNP ++ +D A L    Y++ ++
Sbjct: 369 WMGKIDKLLLDPARAG-AYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKL 427

Query: 355 QWFDMFPHTDHAEVLTL 371
              DMFP T H E + L
Sbjct: 428 GLIDMFPQTHHIEAMAL 444