Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  447 bits (1151), Expect = e-130
 Identities = 223/379 (58%), Positives = 277/379 (73%), Gaps = 5/379 (1%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAP---ATDVQWLPPVTSADTAFRN 57
           MQC +F + +C SC     P  +Q+  K Q+L++L+AP   +T+ Q+LPPV   D+ FRN
Sbjct: 1   MQCGYFERGQCQSCRHIKLPMVQQLAAKTQELQQLLAPFVVSTNTQFLPPVVGEDSGFRN 60

Query: 58  KAKMVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLK 117
           KAKMVVLGAAHAP+LGI    G+ +SL  C LYP  MQ LL  LE +++ AGIPPY   K
Sbjct: 61  KAKMVVLGAAHAPVLGIVSPNGEAVSLCDCLLYPADMQALLYRLERFVQQAGIPPYRIDK 120

Query: 118 KKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHM 177
            KGELK+ILLTRS+  G++MLRFV RS   + RIER LP L+A +P I V+SVNIQP+HM
Sbjct: 121 AKGELKYILLTRSQVRGEYMLRFVLRSPDAIARIERELPALMAEYPQINVVSVNIQPIHM 180

Query: 178 ARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQM 237
           A LEG+EEIFLTE   L E FNDVP+ IRPKSFFQTNP VA +LY TAR WV E AP  +
Sbjct: 181 AILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVGEFAPKSL 240

Query: 238 WDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQ 297
           WDLFCGVGGF LHCA+ D  +TGIEIE EAIA A+ SAQMMG+DN+ F ALDS  F++  
Sbjct: 241 WDLFCGVGGFGLHCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALDSTDFAKGD 300

Query: 298 MSA--PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQ 355
            +A  P+L++VNPPRRG+G  L   L   AP+ ILYSSCNP+T+ KD+  +  YQ+ RVQ
Sbjct: 301 AAATKPDLIIVNPPRRGIGESLCDALSEFAPRAILYSSCNPKTLAKDLVHIRGYQLTRVQ 360

Query: 356 WFDMFPHTDHAEVLTLLVR 374
            FD+FPH+DH EVL +LV+
Sbjct: 361 LFDLFPHSDHFEVLAMLVK 379