Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil-5-)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 19/182 (10%)

Query: 209 SFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAI 268
           SF Q N KVA ++   A   V + +   + +L+CG G F++  A     V   E+   ++
Sbjct: 186 SFTQPNAKVAIKMLEWAID-VTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSV 244

Query: 269 ASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRGL 313
            +AQ + ++ GIDNL    + + +FS +                      + V+PPR G+
Sbjct: 245 DAAQYNIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRAGI 304

Query: 314 GSELTAQLEALAPKYILYSSCNPQTMVKDIAEL-SSYQMIRVQWFDMFPHTDHAEVLTLL 372
                  ++    + ILY SCNP T+  ++ +L  ++++ R   FD FP+TDH E   LL
Sbjct: 305 DPATLDLVQGY--ERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 373 VR 374
            R
Sbjct: 363 ER 364