Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dyella japonica UNC79MFTsu3.2

 Score = 87.8 bits (216), Expect = 5e-22
 Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 49/389 (12%)

Query: 10  RCTSCHLCAQPYSEQVTNKDQQLRE------LIAPATDVQWLPPVTSADTAFRNKAKMVV 63
           +C+ C L     + Q+  K + L E       +APA    WLPP+T    A+R K ++ V
Sbjct: 73  QCSGCALQHLDAASQIAAKQRVLAENFERIGKVAPAA---WLPPLTDQPWAYRRKGRLSV 129

Query: 64  LGAAHAP--ILGI--EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKK 119
                    ++G   ED       +  C +    +   +  L   +          L   
Sbjct: 130 RNVVKKGRVLVGFREEDNPRFVADIEQCEVVHPALGPKIGLLGELV--------GSLDAA 181

Query: 120 GELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQP----- 174
           G++  I     +++   + R        L+ +       + AF      ++ +QP     
Sbjct: 182 GDIAQIEFAAGDDTVALVFRH-------LKPLSEQDLAKLTAFAQAHDFAIYLQPGGISS 234

Query: 175 VHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAP 234
           VH    E     F  E     E   DV +  RP  F Q N  +  ++ A A   +     
Sbjct: 235 VHPLWPEQPRLAFRIEAG---EGVPDVELEFRPLDFVQVNAGMNRRMMARALELLDPQPT 291

Query: 235 TQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFS 294
            ++ DLFCG+G F L  A     V G+E E   +  A ++A   G+ N  F   + A   
Sbjct: 292 DRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVERAAQNAMRNGLANARF---EVANLF 348

Query: 295 QSQMSAP------ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKD---IAE 345
           + Q +AP      + +L++PPR G   ++   L   A + I+Y SC+P ++ +D   + +
Sbjct: 349 EDQRNAPWARQAWDKLLLDPPRAG-ADKVLEYLPHRATQRIVYVSCHPGSLARDAGILVQ 407

Query: 346 LSSYQMIRVQWFDMFPHTDHAEVLTLLVR 374
              +++      DMFPHT H E + L  R
Sbjct: 408 KHGFRLSAAGVMDMFPHTAHVESIALFER 436