Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  132 bits (331), Expect = 3e-35
 Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 14/379 (3%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQW---LPPVTSA-DTAFRNKAKMVVLGA 66
           C  C     PY  Q+  K++ +R+ +     ++    LP + S     FRNK +      
Sbjct: 80  CGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTD 139

Query: 67  AHAPI-LGIEDAQGQPLSLVT-CPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKF 124
               + LG+    G  +  VT C L       ++    +  R +G+P ++    +G  +F
Sbjct: 140 DREMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRF 199

Query: 125 ILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIA-AFPMIEVISVNIQPVHMARLEGE 183
           +++      GQ +++ +   H   E + R   T +  A P +     +I+  +     G+
Sbjct: 200 LVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQVAYGD 259

Query: 184 EEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCG 243
             +F      L E    + +     +F QTN +  E LY              +WDL+CG
Sbjct: 260 ATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGREHVWDLYCG 319

Query: 244 VGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAA------LDSAKFSQSQ 297
           VG  AL  A     + G+E  P ++ +AQR+AQ  G  +  F A      L S    ++Q
Sbjct: 320 VGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRSKGKAQ 379

Query: 298 MSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL-SSYQMIRVQW 356
              P++V+ +PPR G+  ++   L   AP  I+Y SC+P TM +D+  L   Y +   + 
Sbjct: 380 EPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQRYTLHEARP 439

Query: 357 FDMFPHTDHAEVLTLLVRK 375
            D+FPHT H E + LL  K
Sbjct: 440 VDLFPHTPHVETVVLLSNK 458