Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Phocaeicola vulgatus CL09T03C04

 Score =  115 bits (287), Expect = 3e-30
 Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 28/392 (7%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQW--LPPVTSADTA--FRNKAKM----- 61
           C  C     PY+EQ+  K +Q+ + +     ++   + P+  ++    +RNK +      
Sbjct: 82  CGGCKWQCLPYTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNK 141

Query: 62  -----------VVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGI 110
                      V     +A    I  A  + L++  C L      ++   + ++      
Sbjct: 142 RWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNY 201

Query: 111 PPYNKLKKKGELKFILLTRSENSGQFMLRFVAR--SHAVLERIERNLPTLIAAFPMIEVI 168
             +N   ++G L+ +++ R+ ++G+ M+    +    + ++ +++ L  +   FP I  +
Sbjct: 202 SFFNLRSQEGMLRNLMI-RTSSTGELMVLLQCKIVEESEMDLMKQLLAFVAERFPQITSL 260

Query: 169 SVNIQPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTW 228
              +       +   E +       + E    +   I  KSF+QTN   A  LY  AR +
Sbjct: 261 LYVVNNKCNDTINDLEVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNF 320

Query: 229 VREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAAL 288
                   ++DL+ G G  A   +     V GIE  PEAI  A+ ++ + GIDN  F A 
Sbjct: 321 AGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAG 380

Query: 289 DSAKFSQ----SQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIA 344
           D          +Q   P++++ +PPR G+  ++   +    P+ I+Y SCNP T  +D++
Sbjct: 381 DMKDILTQEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLS 440

Query: 345 EL-SSYQMIRVQWFDMFPHTDHAEVLTLLVRK 375
            L + Y+++ VQ  DMFPHT H E + LL ++
Sbjct: 441 LLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472