Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  111 bits (278), Expect = 3e-29
 Identities = 104/400 (26%), Positives = 177/400 (44%), Gaps = 50/400 (12%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVT----SADTAF-RNKAKM---- 61
           C  C     PYSEQ+  K +Q+ + +     ++ LP ++    SA T F RNK +     
Sbjct: 64  CGGCKWQVLPYSEQIRYKQKQVEDNLRRIGKIE-LPEISPILGSAKTEFYRNKLEFTFSN 122

Query: 62  ------------VVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAG 109
                       V     +A    I  A  + L++  C L       +   + ++     
Sbjct: 123 KRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHD 182

Query: 110 IPPYNKLKKKGELKFILLTRSENSGQFMLRFVAR--SHAVLERIERNLPTLIAAFPMIEV 167
               N   ++G L+ +++ R+ ++G+ M+  + +      +E  ++ L  +  +FP I  
Sbjct: 183 YSFINLRTQEGMLRNLII-RTSSTGELMVIVICKITEDHEMELFKQLLQFIADSFPEITS 241

Query: 168 I----------SVNIQPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKV 217
           +          ++N   VH+   +G++ +F        E    +   + PKSF+QTN + 
Sbjct: 242 LLYIINNKCNDTINDLDVHV--FKGKDHMF--------EEMEGLRFKVGPKSFYQTNSEQ 291

Query: 218 AEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQM 277
           A  LY  AR +        ++DL+ G G  A   +     V GIE  PEAI  A+ +A++
Sbjct: 292 AYNLYKIAREFAGLTGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEI 351

Query: 278 MGIDNLSFAALDSAKFSQ----SQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSS 333
             I N  F A D          +Q   P++++ +PPR G+  ++   +    PK I+Y S
Sbjct: 352 NEIKNALFYAGDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVS 411

Query: 334 CNPQTMVKDIAEL-SSYQMIRVQWFDMFPHTDHAEVLTLL 372
           CNP T  +D+  L   Y++  VQ  DMFPHT H E + LL
Sbjct: 412 CNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLL 451