Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  443 bits (1140), Expect = e-129
 Identities = 220/379 (58%), Positives = 277/379 (73%), Gaps = 5/379 (1%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAP---ATDVQWLPPVTSADTAFRN 57
           +QC +F + +C SC     P ++Q+  K+ +L++L+AP    T+ Q+LPPV    + FRN
Sbjct: 5   VQCGYFERGQCQSCRHIKLPMAQQLAAKNLELQQLLAPFVDKTEPQFLPPVVGDSSGFRN 64

Query: 58  KAKMVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLK 117
           KAKMV LGAAHAP+LGI    G+ +SL  C LYP  MQ LL  LE +++ AGIPPY   K
Sbjct: 65  KAKMVALGAAHAPVLGIVSPSGEAVSLCDCLLYPTDMQALLHRLERFVQQAGIPPYRVDK 124

Query: 118 KKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHM 177
            KGELKFILLTRS+  G++MLRFV RS   + RIER LPTL+A +P I+V+SVN+QPVHM
Sbjct: 125 AKGELKFILLTRSQVRGEYMLRFVLRSRDAIARIERELPTLMAEYPQIKVVSVNLQPVHM 184

Query: 178 ARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQM 237
           A LEGEEEIFLTE   L E FNDVP+ IRPKSFFQTNP+VA +LY TAR WV + AP  +
Sbjct: 185 AILEGEEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPASL 244

Query: 238 WDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQ 297
           WDLFCGVGGF LHCAA D  +TGIEIE EAIA A+ SAQ+MG+D + F ALDS  F++ +
Sbjct: 245 WDLFCGVGGFGLHCAAKDIPLTGIEIEAEAIACAKMSAQLMGLDKVEFMALDSTDFAKGE 304

Query: 298 --MSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQ 355
              + PEL++VNPPRRG+G  L   L   APK ILYSSCNP+T+ KD+  +  Y++ +VQ
Sbjct: 305 AAQTKPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIRGYRLTKVQ 364

Query: 356 WFDMFPHTDHAEVLTLLVR 374
            FD+FPH+DH EVL LLV+
Sbjct: 365 LFDLFPHSDHFEVLALLVK 383