Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  102 bits (254), Expect = 2e-26
 Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 29/373 (7%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQW--LPPVTSADTAFRNKAKMVVLGAAH 68
           C  C L     + Q  +K   L +++A     +   +P +T     +R +A++  L   +
Sbjct: 89  CGGCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKN 148

Query: 69  APILGI---EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFI 125
              L +     +  Q + + +C +  +P+ +L+A     +        N+L  K  L  +
Sbjct: 149 TKQLSLGFRASSSNQVVPIDSCLVLAKPLADLIAPFAKLL--------NQLAAKSSLGHV 200

Query: 126 LLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEE 185
            L  ++N    ++R       + + +       +A F     I + +Q  +     G   
Sbjct: 201 ELIDADNGHFAVIR-------ITKPLNDKDMAKLAQFAEQHQIHICLQD-NNGEFHGVNG 252

Query: 186 IFLTETQSLLEHFND---VPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFC 242
             L     LL+   D   V +   P +F Q N ++ + + A A  W+      ++ DLFC
Sbjct: 253 TLLLPVYQLLDDNADATPVSLTFTPGNFVQVNAQINKTMVAQALEWLAPQPGERILDLFC 312

Query: 243 GVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD-SAKFS-QSQMSA 300
           G+G F+L  A     V G+E  PE ++ A+ +A   G+ NL+F   D SA  S +  M  
Sbjct: 313 GMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGK 372

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQWFD 358
            + +L++P R G   E    L+ + P+ ++Y SCNP ++ +D A L    Y++ ++   D
Sbjct: 373 IDKLLLDPARAG-AFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLID 431

Query: 359 MFPHTDHAEVLTL 371
           MFP T H E + L
Sbjct: 432 MFPQTHHIEAMAL 444