Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  344 bits (882), Expect = 8e-99
 Identities = 207/629 (32%), Positives = 342/629 (54%), Gaps = 9/629 (1%)

Query: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGR 60
           +KF HKI+  +  +++      S     +     R  +  ++      +       + GR
Sbjct: 5   LKFGHKILLGACAIVMTVFLSFSLFNDHRQEASTREALHSNLQATGQLLGANLGSWLAGR 64

Query: 61  KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWD 120
             + + A   +  +P PD +  ++SQ +I  TF+    GLE     I+ +     G  +D
Sbjct: 65  ILLIEGAAETVAAHPTPDTISRVLSQDIITKTFIASYVGLEDSRFFIHPERVMPDG--YD 122

Query: 121 PRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
            R R WYKDA    + V+T PY  +    ++++ A P+K    G+ +G +   +SL +LA
Sbjct: 123 VRQRSWYKDAARTLQPVLTEPYIGAGIDYLIMTQAAPIK--VNGKAVGVLGASLSLEQLA 180

Query: 181 ELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFL--GESKINVDTHQVIINGKP 238
           +++N V L   GY F+VS+DG  + HP      + +++    G   IN   ++V  NG+ 
Sbjct: 181 KIINAVDLNGIGYAFLVSDDGKILVHPDSTRVTQTLAQAFPEGPPSINRALNEVQENGQA 240

Query: 239 YAVSFSDVEGED---WYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL 295
             V+F+ ++G     W +G+ +D++ AYAAL E R S LI T+IA+++ V +L  ++  L
Sbjct: 241 RIVTFTPIDGLPSLHWSIGLSVDKDKAYAALHEFRTSALIATLIAMLVMVGLLGLLINAL 300

Query: 296 MKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAE 355
           M+PL ++  A+Q++A GEGDLTQRL + + +EF  +A GFN F E +Q+ + +  A   +
Sbjct: 301 MRPLRSMGLAMQSIADGEGDLTQRLHSLSRDEFGLMAAGFNRFVERIQQSIREVLASSIQ 360

Query: 356 ILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDA 415
           + + +   S     S ++  +Q      +ATA++E+   + ++A +A  A+S A    D 
Sbjct: 361 LTQLASQVSQASNSSLKSSDTQAALTHNVATAINELGAAAQEIARSAAHASSRASDTRDR 420

Query: 416 AAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNA 475
              G  VV ++  A+  LS+ +     D++ L   T  I  +L VI  I+DQTNLLALNA
Sbjct: 421 TREGQSVVQQSISAMSQLSSQVVNTRQDIESLNEKTLKIGRILDVIKGISDQTNLLALNA 480

Query: 476 AIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTA 535
           AIEAARAG++GRGFAVV+DEVRTLA RTQQS  EI  MIE LQ+ A     AM  S+  +
Sbjct: 481 AIEAARAGDAGRGFAVVSDEVRTLAHRTQQSAQEIHGMIEALQANAGNAVSAMLESQRYS 540

Query: 536 ASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVA 595
              VN A+ A E L+++ L I +I ++N+ +A+A EEQ+ V + ++ +   I DL+ ++ 
Sbjct: 541 DDNVNTAKLAGERLDRVLLGIGEIDEINLSVATATEEQTSVVDNLDRDISHINDLNQEMV 600

Query: 596 ESADEANMSMQIQTENIREQDAILNKFKV 624
            +      +     +  R    ++N FK+
Sbjct: 601 GNLQSTLQACTELEDQSRRLQQMVNTFKI 629