Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  232 bits (591), Expect = 5e-65
 Identities = 160/530 (30%), Positives = 267/530 (50%), Gaps = 33/530 (6%)

Query: 122 RVRPWYKDAKNAGKLVITAPYA-DSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
           R   WY  AK+  K  +  PY  +   G  ++  +  V     G+F G +  D++L    
Sbjct: 181 REAEWYLCAKDTQKPCLMEPYLYEITPGNNMLMTSLTVPIVRGGRFRGVVGVDLNLPVFQ 240

Query: 181 ELVNEVK--LFDA-GYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTHQVIINGK 237
           +++ E+   L+     V ++S  G  +A    +   +P+ E + +S  N    Q++  GK
Sbjct: 241 KMIEELSASLYQGQAKVTLLSTKGLIVAASHYDKKARPLGEAIDKSLAN----QILGLGK 296

Query: 238 PYAVSFSD------------VEGEDWYVGVVIDEEIAYAALDE-----------LRRSTL 274
                 +D            + G  W + + +  +IA A+ ++           L R  L
Sbjct: 297 GDGYLLNDSSMIVAYPINIPLSGSQWLLAIEVPRQIALASAEQVEGSMQAMAASLGRFVL 356

Query: 275 IFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIG 334
           +  +    ++V ++   +R ++ P+  +   +  +AS EGDLTQ L  +   E   L  G
Sbjct: 357 LLGIGIAAVAVILIALFIRSVVAPIQQIQQRVSQLASAEGDLTQSLKVDEHAELIALGNG 416

Query: 335 FNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATT 394
           FN F   L   + + K +  E    S++T+   +++ +++  Q  E+E + TA++EM+ T
Sbjct: 417 FNAFIGKLHGLISELKKVATESRNESQATARIAEETKQSVNRQYSEIESVVTAVNEMSHT 476

Query: 395 SSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSA-TIDAAVDDVKVLESATAN 453
           + +VA  ++  AS +           D +T+    + T+S  ++ A +   KV ES+T N
Sbjct: 477 AHEVAKASEQTASESAAMASQVKVSQDSLTQAVSLVSTMSKESLQAKIAVGKVAESST-N 535

Query: 454 IETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNM 513
           I  +L+VI+ IA QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST +I  +
Sbjct: 536 ISKILEVISAIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQASTDDISRL 595

Query: 514 IEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQ 573
           I+ L+      +  +      A  AV Q + A EAL  +   I +IS+   QIA+AAEEQ
Sbjct: 596 IDALEQEVKGASGIIDKGVGLAEQAVAQTEQAFEALSVMVAGINEISNQVTQIATAAEEQ 655

Query: 574 SLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
           S V EE++ N   I D + ++ + A +A  S +   + +  Q++ L K +
Sbjct: 656 SAVTEEVSRNITGISDSAAELMDLAGKARESSESLAKLVGRQESQLAKLR 705