Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  246 bits (629), Expect = 2e-69
 Identities = 170/529 (32%), Positives = 272/529 (51%), Gaps = 23/529 (4%)

Query: 117 PTWDPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSL 176
           P +    RPW+++A + G L +  P  D+  G I  +V TPV   A GQ LG    D+ +
Sbjct: 139 PNYYTNKRPWWQEALDKGGLFVGDPAVDANDGSISATVKTPVY-GANGQLLGIGGMDILI 197

Query: 177 AELAE-LVNEVKLFDAGYVFIVSEDGTTIAHP-------------KKEFNGKPMSEFLGE 222
             + + L+  +K   +G  F+++ DG  +  P             K + NG      LG+
Sbjct: 198 DTIGKSLLAPIKYQGSGQAFLMTGDGKLVYFPGFNESFPPGSAIQKVDNNGSEGFTALGQ 257

Query: 223 --SKINVDTHQVIINGKPYAVSFSDVEGE----DWYVGVVIDEEIAYAAL-DELRRSTLI 275
              + +     V+  G P  V+F +V G+     W++  ++  E+  A + D    + L+
Sbjct: 258 LMQRQSSGFTDVVYQGSPQRVAFVEVAGDYPKQKWHLAFMLPHEVIEAPVRDAFWNACLM 317

Query: 276 FTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGF 335
              I L++ V V L ++  L + L++L  A+ N+ASGEGDL++R+    ++E   +A  F
Sbjct: 318 SLGIILLVGVTVWLLLLP-LRRQLESLLGAMDNMASGEGDLSRRIDIQREDELGLMADAF 376

Query: 336 NTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTS 395
           N F   +Q+ L Q++ +  ++  G          +  A+  Q  +++ +A A  EMA TS
Sbjct: 377 NRFAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQIDSVAAAAIEMAHTS 436

Query: 396 SDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIE 455
            ++A +AQ  A  A+ A   A  G  +V + T  I+TLS+ +  A   +K L  ++  I 
Sbjct: 437 QEMAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEAAAVIKELRGSSEKIG 496

Query: 456 TVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIE 515
            VL VI +IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ ST  I+ +I+
Sbjct: 497 EVLSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQ 556

Query: 516 KLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSL 575
           +LQ  A      M    + A           ++L KI  AI  I     +I  A  +Q++
Sbjct: 557 RLQQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGKITDAIGAILQQTTEITVAIGQQAV 616

Query: 576 VAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624
           VA+E+  N   ++ LSD    ++ E  +S++   +        +++F+V
Sbjct: 617 VADEVAQNVENVRGLSDDSHSASQELAVSLKAFEQLTHALSGNISQFRV 665