Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (573), Expect = 5e-63
 Identities = 137/330 (41%), Positives = 200/330 (60%), Gaps = 4/330 (1%)

Query: 272 STLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKL 331
           S ++F +I LV+  F L  I+R +M+P+  ++DAI  + + + DLT R  T  D+E  ++
Sbjct: 270 SIVVFILITLVLIGFTLA-IIRSIMEPVQRISDAISRIEATK-DLTLRCDTKVDDEIGQI 327

Query: 332 AIGFNTFTETLQKQLIQSKAIGAEILRGS-ESTSMTLQQSAEAMRSQLHELEQLATAMHE 390
           A  FN+  E+ Q  LI+      E++  S +  S    +++E +  QL+E + +ATA+ E
Sbjct: 328 ARHFNSMVESFQS-LIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITE 386

Query: 391 MATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESA 450
           M  T  ++A+N + AA  A    D A  G   V  T + I  L+A +  +   V  LE  
Sbjct: 387 MGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKD 446

Query: 451 TANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEI 510
           +  I +VL VI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ+ST EI
Sbjct: 447 SETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEI 506

Query: 511 RNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAA 570
             +I+ LQS   ++   M  ++     + +QA  A   LE+I   +  I DM+ QIA+A 
Sbjct: 507 AGIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAI 566

Query: 571 EEQSLVAEEINNNTVKIKDLSDQVAESADE 600
           EEQS+VA E+N N V I+D++ + A++ADE
Sbjct: 567 EEQSMVASEVNKNVVVIRDIAAESAQAADE 596



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 24/220 (10%)

Query: 395 SSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANI 454
           S  +A+     +SA K      A   D ++    A  T+S  +   +  V ++    A I
Sbjct: 231 SGSMASLRDSISSAEKSLVQLKAQSMDAISDAESATVTISIVVFILITLV-LIGFTLAII 289

Query: 455 ETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 514
            ++++ +  I+D  +       IEA +   + R    V DE+  +A+         +++I
Sbjct: 290 RSIMEPVQRISDAIS------RIEATK-DLTLRCDTKVDDEIGQIARHFNSMVESFQSLI 342

Query: 515 EKLQSGANAVAVAMSHS-KDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQ 573
            ++ +    V    +HS ++ + +++  ++G    L +        +DM   +A+A  E 
Sbjct: 343 REVLTSVEVV----NHSCQELSENSMRASEGVGRQLNE--------TDM---VATAITEM 387

Query: 574 SLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIR 613
               +EI +NT    + +    ++A +  + ++   E I+
Sbjct: 388 GATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQ 427