Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  232 bits (592), Expect = 4e-65
 Identities = 169/529 (31%), Positives = 266/529 (50%), Gaps = 31/529 (5%)

Query: 122 RVRPWYKDAKNAGKLVITAPYADSAS-GEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
           R   WY  AK+  +  +  PY    S G   +  +  V     G F G I  DV+L    
Sbjct: 180 REAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGVDVNLPVFQ 239

Query: 181 ELVNEVK--LFDA-GYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKIN----------- 226
           +L++E+   L+     V ++S+ G  +A    +   +P+ E +  S  +           
Sbjct: 240 KLIDELSASLYQGKAKVTLLSQKGLVVAASHYDKKARPLGESIAPSLASQLTGLHRQGGY 299

Query: 227 VDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRST-----------LI 275
           ++    II   P  +  +  +   W + + + +  AY A + + ++            LI
Sbjct: 300 LEQGDNIIVAYPIEIPLAKAQ---WSLVIEVAKADAYQAANAMDKAMSAMASSLGSLLLI 356

Query: 276 FTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGF 335
             VI  +I+V  +  ++R ++ PL  +   ++N+AS EGDLTQ+++  +  E   L  G 
Sbjct: 357 VGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIALGGGI 416

Query: 336 NTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTS 395
           N F   L+  + + K + +     S+  +   QQ+  ++  Q  ++E + TA++EM+ T+
Sbjct: 417 NGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNEMSATA 476

Query: 396 SDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDV-KVLESATANI 454
            +VA  ++  AS  +       AG D +++    +  +S     A + V KV ES+T NI
Sbjct: 477 LEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAESST-NI 535

Query: 455 ETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 514
             +L+VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST EI  +I
Sbjct: 536 SKILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLI 595

Query: 515 EKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQS 574
           E LQ   N+ +  +    D A  AV Q + A  +L  I   IQ++S     IA+AAEEQS
Sbjct: 596 EALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQS 655

Query: 575 LVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
            V EE++ N   I D + ++A  ADEA  S       + +Q   L K K
Sbjct: 656 AVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKLK 704