Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  235 bits (600), Expect = 3e-66
 Identities = 152/477 (31%), Positives = 246/477 (51%), Gaps = 30/477 (6%)

Query: 178 ELAELVNEVKLFDAGYVFIVSEDGTTIAHPKK------------EFNGKPMSEFL----- 220
           ++ + +  V+   AGY FI   DG    H  K            + NGK +   L     
Sbjct: 78  DVNKALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEGTAQIGMTDPNGKKIVVGLIDAAR 137

Query: 221 -GESKINVDTHQVIINGKPYAVSFS-DVEGEDWYVG-----------VVIDEEIAYAALD 267
            G+   N D  +  + G    + ++  V G+DW +G           V    E+    ++
Sbjct: 138 SGDGFFNYDYSKPGVTGLVPKIGYAATVPGKDWILGTGAYTDDIDAQVESYREVMTKHMN 197

Query: 268 ELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEE 327
           +     L+F ++ + I+  V+L   + ++ P+  +   ++++A GEGDLT+RL     +E
Sbjct: 198 DKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDE 257

Query: 328 FAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATA 387
            A L   FN F + LQ  +        E+  G+++ S      A+ + S  +E +Q+ TA
Sbjct: 258 IAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTA 317

Query: 388 MHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVL 447
           + EM+ T+S+VA +    A A + A        + V  +   + TL A ID A   +  L
Sbjct: 318 ITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSL 377

Query: 448 ESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQST 507
              +  I +VL VI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST
Sbjct: 378 NEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQAST 437

Query: 508 TEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIA 567
            EI  M+ +L +  +    +M  S+ +   +V  ++  +++L  +  A+  I+DM+ QIA
Sbjct: 438 LEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIA 497

Query: 568 SAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624
           +AA EQS V EEIN N   I+++ +++ ++++ A+ + Q      R  D ++ +FKV
Sbjct: 498 TAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFKV 554