Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  246 bits (629), Expect = 2e-69
 Identities = 147/462 (31%), Positives = 249/462 (53%), Gaps = 18/462 (3%)

Query: 174 VSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTHQVI 233
           +SL  LA+ + + K+ + G V++   +G    H + +F GK +S       + +   Q +
Sbjct: 184 LSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSA------LGIKDPQAL 237

Query: 234 INGKPYAVSFSDVEGED------------WYVGVVIDEEIAYAALDELRRSTLIFTVIAL 281
           ++ + +A S  D  G D            WY+   + ++  + A+++      +  +I  
Sbjct: 238 LSQQTFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQLALMGLILA 297

Query: 282 VISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTET 341
            I +F   +++  L+ P   L D ++++  GEGDL+ RL  +  +E   +A  +N F   
Sbjct: 298 AIIMFTSAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTY 357

Query: 342 LQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANN 401
           L K L    A   ++ +  E      +     +  Q+ ++EQ+ATA+HEM  T+ ++A++
Sbjct: 358 LSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASS 417

Query: 402 AQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVI 461
           A  AA  A+VAD +   G   V  T  ++ ++S  +    + V  L    ++I+TVL+VI
Sbjct: 418 ANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVI 477

Query: 462 NDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGA 521
             +++QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA R+  ST +IR++IEKLQ+  
Sbjct: 478 RGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKT 537

Query: 522 NAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEIN 581
             V  A+  S + +  +  +A  + E L  I   IQ +S+M++QIA+A EEQS V  EIN
Sbjct: 538 TEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEIN 597

Query: 582 NNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
            +   I D+S   ++   + ++      E   + + ++++FK
Sbjct: 598 PHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLNELVSRFK 639