Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  283 bits (724), Expect = 2e-80
 Identities = 189/637 (29%), Positives = 322/637 (50%), Gaps = 28/637 (4%)

Query: 6   KIVAASSVLLLATVALLSG-SQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGRKSIA 64
           K + AS V L+A   L+S    Y ++++   + V+D +  +    S   A     +    
Sbjct: 5   KSLVASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVTRNESAKVATWFGAKAQAM 64

Query: 65  QYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPS--WNPGPT---- 118
                        DN           +    + FG + DGS  + +    W  G      
Sbjct: 65  DELARHYRLGSYQDNYVNTARLATDLSGVARIYFGFD-DGSAYSTETGDKWLNGKAIPGK 123

Query: 119 WDPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAE 178
           +DPR RPWY+  K   +L +T  Y D  SG  ++S+   +K+   G  LG    D+ L  
Sbjct: 124 YDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISI---LKNLGDGVVLG----DIELTY 176

Query: 179 LAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEF-NGKPMSEF---------LGESKINVD 228
           L ++V+ +  +      I  + G  +A       +G   S+F         +G  ++  +
Sbjct: 177 LHDVVSAID-YPGAVALITDQTGKVLASESPTLVSGSRFSDFGLPQVQQKIIGSDEVMQE 235

Query: 229 THQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVL 288
                ++   ++ +   V G+ W++ + +D+  AYA +D+   S L+ + I L+ ++ +L
Sbjct: 236 YRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIMLLCAISIL 295

Query: 289 LFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQ 348
           L ++ +L +P+ +L   +  ++ G GDLT+RL  + +++  ++++G N F   LQ  + +
Sbjct: 296 LGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIANLQAMMRE 355

Query: 349 SKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASA 408
                A I    E  +   + +   + +   E EQ+  A+ EM+ T++DVA N    AS 
Sbjct: 356 VLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQNGSETASF 415

Query: 409 AKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQT 468
            ++ ++ A A   VV + T+ ++ L   ++   D +  ++  T NI  VLKVI DIADQT
Sbjct: 416 TQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKVIGDIADQT 475

Query: 469 NLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAM 528
           NLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST EI   +  L+  +N+   +M
Sbjct: 476 NLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDASNSAIHSM 535

Query: 529 SHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIK 588
             +K T     +  +     L+ I  ++ QI+D+N QIA+AAEEQS V+ EI  N   I 
Sbjct: 536 EVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEITRNMSAIC 595

Query: 589 DLSDQVAESADEA-NMSMQIQTENIREQDAILNKFKV 624
           D+++++A S + + N ++ + T N ++ + I+ +FK+
Sbjct: 596 DMANELARSGESSRNETVNLATAN-QQLEQIVGQFKL 631