Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  267 bits (682), Expect = 1e-75
 Identities = 164/461 (35%), Positives = 253/461 (54%), Gaps = 14/461 (3%)

Query: 175 SLAELAELVNEVKLFDAGYVFIVSEDGTTIAHP----------KKEFNGKPMSEFLGESK 224
           SL ++ +L++  K+ + G+V++V   G    HP          K  ++   +   L  S 
Sbjct: 185 SLDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIGSLLNRSD 244

Query: 225 IN-VDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVI 283
            N +DT    I G+   V+ S +   DWY+   + E   +A L +     LI+T+I    
Sbjct: 245 FNLIDTE---IQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTLIIAAG 301

Query: 284 SVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQ 343
            + + + +   + +P+  +    +++  GEGDL QRL  N  +E A+LA GFN+F   +Q
Sbjct: 302 FIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQ 361

Query: 344 KQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQ 403
             +I+      ++   ++  S   QQ+ E    Q      + TA++EM  T +++A+NA 
Sbjct: 362 DSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAA 421

Query: 404 GAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVIND 463
            AA AAK AD  + +G  VVT+    I+ LS  ++   + ++ L + T +I  +L VI  
Sbjct: 422 QAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIRA 481

Query: 464 IADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANA 523
           I++QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RT  ST E++ MI+KLQS A+ 
Sbjct: 482 ISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASR 541

Query: 524 VAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNN 583
              AM+ S+  +   V     A+++L  I   I  ISDMNIQ+A+A EEQS V E+IN N
Sbjct: 542 AVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRN 601

Query: 584 TVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624
             +I D++ + A +A  A  +     +     D ++ KFKV
Sbjct: 602 VTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642