Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  265 bits (676), Expect = 6e-75
 Identities = 177/464 (38%), Positives = 255/464 (54%), Gaps = 24/464 (5%)

Query: 164 GQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGES 223
           GQ  GS+ + +S  +     N    + A    ++ +DG  +      F G   ++    S
Sbjct: 170 GQHTGSVEFGMSFGQ-PFFDNFKNAYQAEITLLLPKDGNFVP-----FGGTFTTDTSASS 223

Query: 224 KIN--VDTHQVI----INGKPYAV---SFSDVEGEDWYV-GVVIDEEIAYAALDELRRST 273
           ++N  +   +VI    ++GK YA+      D  G+ + V  + +D   +  A+ ++R   
Sbjct: 224 ELNKVMQGTEVIRTIDLDGKSYALYRHGMQDYSGKTFGVLDIALDRSHSEQAMSDIRFKL 283

Query: 274 LIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAI 333
           ++   IA +I   +  FI + + +P+    +A+ ++A GEGDLT+R+   + +E A+LA+
Sbjct: 284 IMIGFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLAL 343

Query: 334 GFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMAT 393
            FN F E +   + Q     + +   +E  S    ++ +  + Q  E EQ+ATAM+EMA 
Sbjct: 344 AFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAA 403

Query: 394 TSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATAN 453
           T  +VA+NA  AA AA  A ++   G  +V K    I  L+  I  A   +  LE  TA 
Sbjct: 404 TVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQ 463

Query: 454 IETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNM 513
           I++VL VI +IADQTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ ST+EI+ M
Sbjct: 464 IDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQM 523

Query: 514 IEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQ 573
           IE LQ  A +    M+ S  T  + V+    A EALE I  A+  IS MNIQIASAA EQ
Sbjct: 524 IEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQ 583

Query: 574 SLVAEEINNNTVKIKDLSDQVAESA-------DE-ANMSMQIQT 609
             V+ EIN N   I D++    ESA       DE A +SM++ T
Sbjct: 584 CAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTT 627



 Score = 38.5 bits (88), Expect = 9e-07
 Identities = 40/211 (18%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 421 DVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAA 480
           D + +   A +  +  I A V  V     +T+ + T  + ++ I ++T  +A    +E  
Sbjct: 336 DEIAQLALAFNRFAEKIHATVAQVS---DSTSLLATSAEEMSAITNETQQMAKRQHLETE 392

Query: 481 RAGESGRGFAVVADEVR-------TLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKD 533
           +   +    A    EV          A    +ST   + ++EK+ S  + +A  ++H   
Sbjct: 393 QVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAH--- 449

Query: 534 TAASAVNQAQGANEALEKIRLAIQQISDM-NIQIASAAEEQSLVAEEINNNTV---KIKD 589
            AA A+N+ +     ++ + + I+ I+D  N+   +AA E +   E+     V   +++ 
Sbjct: 450 -AAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 508

Query: 590 LSDQVAESADEANMSMQIQTENIREQDAILN 620
           L+ +   S  E    ++    + +   + +N
Sbjct: 509 LASRTQASTSEIQQMIEALQHSAKSTVSTMN 539



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 499 LAQRTQQSTTEIRNMIEKLQSGANAVAVAMS-HSKDTAASAVNQAQGANEALEKIRLAIQ 557
           +A+   +   E  N +  +  G   +   +   SKD  A     A   N   EKI   + 
Sbjct: 301 IAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQL---ALAFNRFAEKIHATVA 357

Query: 558 QISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTEN 611
           Q+SD    +A++AEE S +  E      +    ++QVA + +E   ++Q    N
Sbjct: 358 QVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHN 411