Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  224 bits (570), Expect = 1e-62
 Identities = 160/502 (31%), Positives = 260/502 (51%), Gaps = 26/502 (5%)

Query: 144 DSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTT 203
           D   G IL  +    +D+A+G+         +    A L+N+ +    GY  ++ ++   
Sbjct: 49  DGQLGSILSVIDVYRQDAASGKMREQEAQKAA----ASLINQTRYAGVGYFILIDDNNQI 104

Query: 204 IAHPKKEF------------NG-KPMSEFLGESKINVDTHQVIINGKPYAVSFSDVEGED 250
           +AH +               NG  P++  L +++ N  +        P +    D   E 
Sbjct: 105 LAHGESASMIGTSAQNFTLPNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEA 164

Query: 251 WYVGVVIDEEIAYAALDELRRST----LIFTVIALVISVFVLLFIVRV---LMKPLDTLN 303
            Y        I  A L +++ S     + + +I  +ISV +  F + +   +  PL+   
Sbjct: 165 RYYPQWGWTLITGAYLSDVKESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAI 224

Query: 304 DAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSEST 363
           +A++++A GEGDL+QRLST   +E A LA  FN F + +   +   + +G  +   ++  
Sbjct: 225 EALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLL 284

Query: 364 SMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVV 423
            + +++S ++      E   +ATA+++M +T+ ++A+N Q AA AA      A     V+
Sbjct: 285 MLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVI 344

Query: 424 TKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAG 483
             T +  + L   + A+    + L  A+  I ++L VI  IA+QTNLLALNAAIEAARAG
Sbjct: 345 DNTVRDTEKLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAG 404

Query: 484 ESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQ 543
             GRGFAVVADEVR LA RTQ ST EI+ +I ++Q+G  +V  + S ++  +     +AQ
Sbjct: 405 SHGRGFAVVADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQ 464

Query: 544 GANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANM 603
            A +A+  I   I  ISDMN Q+ASA EEQSLV EEIN N   I +L+ +V+  A+E+N 
Sbjct: 465 EAGQAMAAILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELT-EVSVKANESNS 523

Query: 604 SMQIQTENI-REQDAILNKFKV 624
                 ++I ++    L +FK+
Sbjct: 524 RAAQSLQDISQDMSHTLGQFKI 545