Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (584), Expect = 3e-64
 Identities = 163/527 (30%), Positives = 273/527 (51%), Gaps = 27/527 (5%)

Query: 122 RVRPWYKDAKNAGKLVITAPYA-DSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
           R   WY  AK   K  +  PY  +   G   +  +  V      QF+G +  DV+L    
Sbjct: 181 RESEWYLCAKETLKPCLMEPYLYEITPGNTALMTSLTVSAVKHKQFIGVVGVDVNLPVFQ 240

Query: 181 ELVNEVK--LFDA-GYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTHQVIINGK 237
            L++++   L+D    V ++S  G  +A        +P++E + + K+ V    +  NG 
Sbjct: 241 VLIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLAESI-DPKLAVQMIALHKNGG 299

Query: 238 PYA------VSFS---DVEGEDWYVGVVIDEEIAYAA-------LDELRRST-LIFTVIA 280
             A      V++     +   +W + + + + +A  +       +D++  S   I  ++ 
Sbjct: 300 YMANDDEIIVAYPIDIPLANAEWSLAIQVPKSMALKSSILLNEKMDDMATSLGSILVIVG 359

Query: 281 LVISVFVLL---FIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNT 337
           L +S+  ++    ++R ++ PL  +   ++N+AS +GDLTQ +  ++  E   L  GFN+
Sbjct: 360 LAVSILAVVTISIVIRSVIAPLRLIQGRVENLASADGDLTQSIEVDSHAELIALGKGFNS 419

Query: 338 FTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSD 397
           F   L+  + + KA+  +    S S++   + + +++  Q  E+E + TA++EM+ T+ +
Sbjct: 420 FIHKLKDLISELKALAGQTQEESLSSAKIAELTRDSVHRQYGEIESVVTAVNEMSATALE 479

Query: 398 VANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSA-TIDAAVDDVKVLESATANIET 456
           VA  ++  A+  +          + +TK    + T+S  ++ A V   KV ES+T NI  
Sbjct: 480 VAKASEQTAAETEAMSRNVHLSEESLTKAMDYVTTMSQESMQAKVAVSKVAESST-NISR 538

Query: 457 VLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEK 516
           +L+VI+ IA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST +I  +I+ 
Sbjct: 539 ILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDA 598

Query: 517 LQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLV 576
           LQ    + +  +    + A  AV+Q + A  +L  +   I++IS     IA+AAEEQS V
Sbjct: 599 LQKEVQSASAIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISAQVTHIAAAAEEQSAV 658

Query: 577 AEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
            EE+N N   I D + ++A  A EA  S  +  E +++Q   L K K
Sbjct: 659 TEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLK 705