Pairwise Alignments

Query, 343 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., ABC-type Fe3+-siderophore transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  321 bits (823), Expect = 2e-92
 Identities = 181/343 (52%), Positives = 240/343 (69%), Gaps = 13/343 (3%)

Query: 4   RFPFAVTISCLTLAVFFAGLYSITVGPMNITISDSIQSLL------FRSEQLTNAIHLVI 57
           RF F V    L  A++     S+ +GP+++T+ DS+ + L           L  A  LV+
Sbjct: 8   RFLFVVLGLLLLTAIWL----SLALGPLSLTLGDSLAAALRLLGAPIEQAGLEQA-ELVL 62

Query: 58  HDIRLPRTLLCLLVGAILALCGTAMQGLFRNPLAEPGIIGVSSGASLGAALAIVLLSDVV 117
             IRLPRTLL    GA+LALCG AMQGLFRNPLA+PG++GVSSGA+LGAA+AIV  + V 
Sbjct: 63  AKIRLPRTLLGCAAGAVLALCGVAMQGLFRNPLADPGLVGVSSGAALGAAVAIVGATFVP 122

Query: 118 S-SLPWVNSLVLPIAAFIGGALTTVLVYRLGTSKFGTSVTIMLLAGVAISALAGAGIGYL 176
           +  L W    +L   AFIGG   T+LVYRLG     T V  MLL+G+A++ALAGA +G  
Sbjct: 123 ALPLSW-EPYLLSAFAFIGGLGVTLLVYRLGRRDGQTHVATMLLSGIALTALAGAVVGLF 181

Query: 177 NYLASDQMLRDLTLWSMGSVAGATTSSILLCSVTLIMLFAYFHWRSMALNALLLGEAEAR 236
            YLA D+ LR LT W++GS+ GA+   +    +  I +  +   R+ ALNALLLGE+EAR
Sbjct: 182 TYLADDRTLRSLTFWNLGSLNGASYVRLWPLLLITIAVAFWLPQRAKALNALLLGESEAR 241

Query: 237 HLGVPVQKLKREMILLSAVGVGVAVSAAGMIGFVGLVVPHIGRMLVGPDHRNLVPVSTLL 296
           HLG  V+++KRE+++ +A+GVG AV+AAG+IGF+GLVVPH+ R+LVGPDHR L+P S L 
Sbjct: 242 HLGFNVERIKRELVVCTALGVGAAVAAAGLIGFIGLVVPHLMRLLVGPDHRLLLPASALA 301

Query: 297 GALMLTLADMVARVAVAPAELPIGIVTALVGAPFFLYLLFQQK 339
           GA +L LAD+ AR+ +APAELPIGIVTAL+GAPFFLYLL +++
Sbjct: 302 GASLLLLADVAARLVIAPAELPIGIVTALLGAPFFLYLLLRER 344