Pairwise Alignments

Query, 343 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., transport system permease protein from Pseudomonas syringae pv. syringae B728a

 Score =  178 bits (452), Expect = 2e-49
 Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 14/339 (4%)

Query: 4   RFPFAVT-ISCLTLAVFFAGLYSITVGPMNITISDSIQSL---LFRSEQLTNAIHL-VIH 58
           R P A++ +  ++  +  A +    +G  +I++    Q L   L+ +  + + I   ++ 
Sbjct: 2   RLPIALSHVLWVSAVLVLAIMIGAAIGETSISLQVVFQVLANKLWAASYVLDPIDEGIVW 61

Query: 59  DIRLPRTLLCLLVGAILALCGTAMQGLFRNPLAEPGIIGVSSGASLGAALAIVLLSDVVS 118
           + RL R ++    GA LA+CG  +Q L RNPLA+P ++G+S+GAS GA L  +L      
Sbjct: 62  NYRLTRAIVAAACGAGLAICGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGFGA-- 119

Query: 119 SLPWVNSLVLPIAAFIGGALTTVLVYRLGTSKFGTSVT-IMLLAGVAISALAGAGIGYL- 176
                 ++ +   AF+G      LV  L  S  GT+    ++LAG+A S L  A   +L 
Sbjct: 120 -----GAISMSAGAFVGAVAAFSLVALLAHSSRGTTAAGQIILAGIAGSQLFNALTSFLI 174

Query: 177 NYLASDQMLRDLTLWSMGSVAGATTSSILLCSVTLIMLFAYFHWRSMALNALLLGEAEAR 236
              AS +  R +  W +G+++G    S+ L   T+++      W   AL+A   G   A 
Sbjct: 175 TKSASSEQARGIMFWLLGNLSGVRWHSVWLAVPTVLVGLLVCLWHRRALDAFTFGSDSAA 234

Query: 237 HLGVPVQKLKREMILLSAVGVGVAVSAAGMIGFVGLVVPHIGRMLVGPDHRNLVPVSTLL 296
            LG+ V++++  +I  +A+   V VS  G IGFVGLV+PH  RMLVG  H  LVP+S L 
Sbjct: 235 SLGIAVRRVQIILITTAALVTAVMVSIVGSIGFVGLVIPHAVRMLVGVRHARLVPLSALS 294

Query: 297 GALMLTLADMVARVAVAPAELPIGIVTALVGAPFFLYLL 335
           GAL L  AD+++R  +    LPIG++TAL+GAP F  +L
Sbjct: 295 GALFLIAADILSRTLIKGQALPIGVITALIGAPVFALIL 333